A deep learning-based digital biopsy for predicting early recurrence in gastric cancer.

Journal: Nature communications

This study describes the development and validation of a multimodal prediction model, Recurrence Stratification and Assessment (RSA), to estimate early postoperative recurrence risk in patients with locally advanced gastric cancer after curative-intent surgery.

Key points:

  • Problem: Early postoperative recurrence remains common in locally advanced gastric cancer, and standard clinicopathologic staging does not adequately capture biological heterogeneity in recurrence risk.
  • Model design:
  • RSA integrates deep learning–extracted histopathologic features from routine H&E-stained slides with conventional clinical variables.
  • The model is designed to be clinically interpretable, using Shapley Additive Explanations (SHAP) to highlight which histologic patterns most influence recurrence risk.
  • Cohorts and performance:
  • Developed in a large, retrospective, multicenter cohort (n=1,763).
  • Validated across two internal validation cohorts, two independent external cohorts from different geographic regions, and explored in a post‑hoc analysis of a prospective clinical trial population (NCT01516944).
  • Demonstrated consistently strong discrimination for early recurrence with AUCs between 0.843 and 0.887 across datasets, suggesting robustness and generalizability.
  • Biological insights:
  • Transcriptomic sequencing and immune profiling were performed on available tumor samples.
  • Tumors classified as low-risk by RSA showed immune-enriched microenvironments and higher expression of immune checkpoint genes, indicating more active antitumor immune responses compared with higher-risk tumors.
  • This implies that differential immune biology may underlie the model’s risk stratification and the observed recurrence patterns.
  • Clinical implications:
  • RSA offers a high-performing, explainable digital pathology tool that could refine postoperative risk stratification beyond standard staging.
  • Potential applications include tailoring surveillance intensity and serving as a biologically informed framework to investigate whether immune checkpoint inhibitors or other immunotherapies are differentially beneficial across risk groups.

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