Clinical validation of a tissue-agnostic genome-wide methylome enrichment assay to monitor response to pembrolizumab.

Journal: NPJ precision oncology

This study evaluated a blood-based circulating tumor DNA (ctDNA) methylation assay as an early marker of response to pembrolizumab in patients with various metastatic solid tumors enrolled in a phase 2 trial (NCT02644369).

Using a tissue-agnostic, genome-wide cfDNA methylation platform (cfMeDIP-seq), the investigators measured ctDNA levels at baseline and again before cycle 3 of pembrolizumab.

A decrease in ctDNA over this interval was:

  • Significantly associated with higher objective response rates
  • Associated with higher clinical benefit rates
  • Linked to longer progression-free survival (PFS) and overall survival (OS) in univariate analyses

In multivariable models adjusting for other clinical factors, the associations with objective response, clinical benefit, and PFS remained significant; the association with OS did not.

The key implication is that a commercial-grade, tissue-agnostic plasma cfDNA methylation assay can serve as an early, blood-only indicator of immunotherapy benefit, potentially enabling more timely treatment decisions for patients on pembrolizumab across multiple solid tumor types.

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